On your desktop should be a TXT file with the applications that were not reinstalled. M$ really effed this one up.
You must reinstall the applications, find your original disks (if you have them) and look for original product keys and reinstall the apps. If you have the key, you can download the correct version from M$ and reinstall.
Best option is to backup with Shadow Protect ($100) to a USB drive in case of restores needed.
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